import mock from collections import defaultdict from searx.engines import pdbe from searx.testing import SearxTestCase class TestPdbeEngine(SearxTestCase): def test_request(self): query = 'test_query' dicto = defaultdict(dict) params = pdbe.request(query, dicto) self.assertTrue('url' in params) self.assertTrue('ebi.ac.uk' in params['url']) self.assertTrue('data' in params) self.assertTrue('q' in params['data']) self.assertTrue(query in params['data']['q']) self.assertTrue('wt' in params['data']) self.assertTrue('json' in params['data']['wt']) self.assertTrue('method' in params) self.assertTrue(params['method'] == 'POST') def test_response(self): self.assertRaises(AttributeError, pdbe.response, None) self.assertRaises(AttributeError, pdbe.response, []) self.assertRaises(AttributeError, pdbe.response, '') self.assertRaises(AttributeError, pdbe.response, '[]') json = """ { "response": { "docs": [ { "citation_title": "X-ray crystal structure of ferric Aplysia limacina myoglobin in different liganded states.", "citation_year": 1993, "entry_author_list": [ "Conti E, Moser C, Rizzi M, Mattevi A, Lionetti C, Coda A, Ascenzi P, Brunori M, Bolognesi M" ], "journal": "J. Mol. Biol.", "journal_page": "498-508", "journal_volume": "233", "pdb_id": "2fal", "status": "REL", "title": "X-RAY CRYSTAL STRUCTURE OF FERRIC APLYSIA LIMACINA MYOGLOBIN IN DIFFERENT LIGANDED STATES" } ], "numFound": 1, "start": 0 }, "responseHeader": { "QTime": 0, "params": { "q": "2fal", "wt": "json" }, "status": 0 } } """ response = mock.Mock(text=json) results = pdbe.response(response) self.assertEqual(type(results), list) self.assertEqual(len(results), 1) self.assertEqual(results[0]['title'], 'X-RAY CRYSTAL STRUCTURE OF FERRIC APLYSIA LIMACINA MYOGLOBIN IN DIFFERENT LIGANDED STATES') self.assertEqual(results[0]['url'], pdbe.pdbe_entry_url.format(pdb_id='2fal')) self.assertEqual(results[0]['img_src'], pdbe.pdbe_preview_url.format(pdb_id='2fal')) self.assertTrue('Conti E' in results[0]['content']) self.assertTrue('X-ray crystal structure of ferric Aplysia limacina myoglobin in different liganded states.' in results[0]['content']) self.assertTrue('1993' in results[0]['content']) # Testing proper handling of PDB entries marked as obsolete json = """ { "response": { "docs": [ { "citation_title": "Obsolete entry test", "citation_year": 2016, "entry_author_list": ["Doe J"], "journal": "J. Obs.", "journal_page": "1-2", "journal_volume": "1", "pdb_id": "xxxx", "status": "OBS", "title": "OBSOLETE ENTRY TEST", "superseded_by": "yyyy" } ], "numFound": 1, "start": 0 }, "responseHeader": { "QTime": 0, "params": { "q": "xxxx", "wt": "json" }, "status": 0 } } """ response = mock.Mock(text=json) results = pdbe.response(response) self.assertEqual(type(results), list) self.assertEqual(len(results), 1) self.assertEqual(results[0]['title'], 'OBSOLETE ENTRY TEST (OBSOLETE)') self.assertTrue(results[0]['content'].startswith('This entry has been superseded by'))